miRBase entry: dse-mir-310

Stem-loop dse-mir-310

Accession

MI0009341

Description

Drosophila sechellia dse-mir-310 precursor miRNA

Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUguauuuacuucuuaacuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure

     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUgua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau aau c
     acc       U   G    UU     -       c   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_1: 14025480-14025568 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-310

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-310-3p

Accession	MIMAT0008779
Description	Drosophila sechellia dse-miR-310-3p mature miRNA
Sequence	54 - UAUUGCACACUUCCCGGCCUUU - 75
Evidence	experimental Illumina [2]

Mature dse-miR-310-5p

Accession	MIMAT0037342
Description	Drosophila sechellia dse-miR-310-5p mature miRNA
Sequence	16 - AGGACGGGUCGUGUGUCAGU - 35
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250