Stem-loop dse-mir-310

Accession

MI0009341

Description

Drosophila sechellia dse-mir-310 precursor miRNA

Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUguauuuacuucuuaacuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure

     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUgua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau aau c
     acc       U   G    UU     -       c   u 

Annotation confidence Not enough data

Genome context

scaffold_1: 14025480-14025568 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-310

Mature dse-miR-310-3p

• Accession: MIMAT0008779
• Description: Drosophila sechellia dse-miR-310-3p mature miRNA
• Sequence: 54 - UAUUGCACACUUCCCGGCCUUU - 75
• Evidence: experimental ; Illumina [2]

Mature dse-miR-310-5p

• Accession: MIMAT0037342
• Description: Drosophila sechellia dse-miR-310-5p mature miRNA
• Sequence: 16 - AGGACGGGUCGUGUGUCAGU - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250