Stem-loop dse-mir-9680

Accession

MI0030891

Description

Drosophila sechellia dse-mir-9680 precursor miRNA

Sequence

AAUUUCUUCAAGCCGAAGGUCUuuguuaauuugauuagAAUUCUGUGCGAAGAAAUUUUu
(((((((((..((.(((..(((..((((...)))).))).))).))..)))))))))...

Structure

---         AA  C   GG   uu    a 
   AAUUUCUUC  GC GAA  UCU  guua  
   |||||||||  || |||  |||  |||| u
   UUAAAGAAG  UG CUU  Aga  uagu  
uUU         CG  U   -A   -u    u 

Annotation confidence Low

Genome context

scaffold_8: 1718473-1718532 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-9680

Mature dse-miR-9680-5p

• Accession: MIMAT0039158
• Description: Drosophila sechellia dse-miR-9680-5p mature miRNA
• Sequence: 1 - AAUUUCUUCAAGCCGAAGGUCU - 22
• Evidence: experimental ; Illumina [1]

Mature dse-miR-9680-3p

• Accession: MIMAT0039159
• Description: Drosophila sechellia dse-miR-9680-3p mature miRNA
• Sequence: 39 - AAUUCUGUGCGAAGAAAUUUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250