miRBase entry: dse-mir-975

Stem-loop dse-mir-975

Accession

MI0030885

Description

Drosophila sechellia dse-mir-975 precursor miRNA

Sequence

uugaguuuuugauuUUAAACACUCCCUACAUCCUGUauguguuuugcauccgaUACAGUUGUAGGAGUCGUUUGCAgucagagauuucaca
..((((((((((((.((((((((((.((((..((((((((((...))))...)))))).))))))))).))))).))))))))))))....

Structure

--uu            U     -     C    UC      ---    u 
    gaguuuuugauu UAAAC ACUCC UACA  CUGUau   gugu  
    |||||||||||| ||||| ||||| ||||  ||||||   |||| u
    uuuagagacugA GUUUG UGAGG AUGU  GACAUa   uacg  
acac            C     C     -    -U      gcc    u

Annotation confidence Not enough data

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Genome context

scaffold_8: 1735124-1735214 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-975

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-975-5p

Accession	MIMAT0039147
Description	Drosophila sechellia dse-miR-975-5p mature miRNA
Sequence	15 - UUAAACACUCCCUACAUCCUGU - 36
Evidence	experimental Illumina [1]

Mature dse-miR-975-3p

Accession	MIMAT0039148
Description	Drosophila sechellia dse-miR-975-3p mature miRNA
Sequence	54 - UACAGUUGUAGGAGUCGUUUGCA - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250