Stem-loop dsi-mir-2582a

Accession

MI0011788

Description

Drosophila simulans dsi-mir-2582a precursor miRNA

Sequence

uauuauucaugauuaccauucauauccUUCACAGUGUUCCUAAUAGAUAGUuauuauuacacUAUCUUUAGCAACACUUUUGAgauaaggaugggauaacgcugcaagaauuauaa
(((.((((.((....((((((.((((..(((.((((((.((((.(((((((((....)).))))))))))).))))))..))))))).))))))..........)).)))).))).

Structure

-   u    a  ------auua      a    cU   -C      C    U       -  u 
 uau auuc ug          ccauuc uauc  UCA  AGUGUU CUAA AGAUAGU ua u
 ||| |||| ||          |||||| ||||  |||  |||||| |||| ||||||| ||  
 aua uaag ac          gguagg auag  AGU  UCACAA GAUU UCUAUca au a
a   u    a  gucgcaauag      a    --   UU      C    -       c  u 

Annotation confidence Not enough data

Genome context

chrX: 3274401-3274516 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-2582a

Mature dsi-miR-2582a-5p

• Accession: MIMAT0012519
• Description: Drosophila simulans dsi-miR-2582a-5p mature miRNA
• Sequence: 28 - UUCACAGUGUUCCUAAUAGAUAGU - 51
• Evidence: experimental ; Illumina [1-2]

Mature dsi-miR-2582a-3p

• Accession: MIMAT0012520
• Description: Drosophila simulans dsi-miR-2582a-3p mature miRNA
• Sequence: 63 - UAUCUUUAGCAACACUUUUGA - 83
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250