Stem-loop dse-mir-2498a

Accession

MI0030865

Description

Drosophila sechellia dse-mir-2498a precursor miRNA

Sequence

323 reads, 102.0 reads per million, 1 experiments

uauAUAAGUAUGUUAUUCUAUUUUGUGuguuuuacaaaAUCUGUGUAACAUGCUUAAUAUauuu
((((((((((((((((.(.((((((((.....))))))))..).))))))))))).)))))...

Structure

---     -           U -U        u 
   uauAU AAGUAUGUUAU C  AUUUUGUG g
   ||||| ||||||||||| |  |||||||| u
   aUAUA UUCGUACAAUG G  UAaaacau u
uuu     A           U UC        u 

Annotation confidence Medium

Genome context

scaffold_1: 14026948-14027011 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-2498a

Mature dse-miR-2498a-5p

• Accession: MIMAT0039126
• Description: Drosophila sechellia dse-miR-2498a-5p mature miRNA
• Sequence: 4 - AUAAGUAUGUUAUUCUAUUUUGUG - 27
• Evidence: experimental ; Illumina [1]

Mature dse-miR-2498a-3p

• Accession: MIMAT0039127
• Description: Drosophila sechellia dse-miR-2498a-3p mature miRNA
• Sequence: 39 - AUCUGUGUAACAUGCUUAAUAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250