miRBase entry: dse-mir-2498a

Stem-loop dse-mir-2498a

Accession

MI0030865

Description

Drosophila sechellia dse-mir-2498a precursor miRNA

Sequence

uauAUAAGUAUGUUAUUCUAUUUUGuguguuuuacaaaAUCUGUGUAACAUGCUUAAUAUAuuu
((((((((((((((((.(.((((((((.....))))))))..).))))))))))).)))))...

Structure

---     -           U -U        u 
   uauAU AAGUAUGUUAU C  AUUUUGug g
   ||||| ||||||||||| |  |||||||| u
   AUAUA UUCGUACAAUG G  UAaaacau u
uuu     A           U UC        u

Annotation confidence Not enough data

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Genome context

scaffold_1: 14026948-14027011 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-2498a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-2498a-5p

Accession	MIMAT0039126
Description	Drosophila sechellia dse-miR-2498a-5p mature miRNA
Sequence	4 - AUAAGUAUGUUAUUCUAUUUUG - 25
Evidence	experimental Illumina [1]

Mature dse-miR-2498a-3p

Accession	MIMAT0039127
Description	Drosophila sechellia dse-miR-2498a-3p mature miRNA
Sequence	39 - AUCUGUGUAACAUGCUUAAUAUA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250