miRBase entry: dse-mir-982c-1

Stem-loop dse-mir-982c-1

Accession

MI0030869

Description

Drosophila sechellia dse-mir-982c-1 precursor miRNA

Sequence

UCUUGGACAAAUAUCAAGUAGAuuauuuuuauacaucaauUUAUUGUUAUUUGUCCUUGAACu
((..(((((((((.(((.((((((.............))))))))).)))))))))..))...

Structure

---  UU         U   G      auuuu 
   UC  GGACAAAUA CAA UAGAuu     u
   ||  ||||||||| ||| ||||||     a
   AG  CCUGUUUAU GUU AUUuaa     u
uCA  UU         U   -      cuaca

Annotation confidence Not enough data

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Genome context

scaffold_4: 2465414-2465476 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-982c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-982c-5p

Accession	MIMAT0039132
Description	Drosophila sechellia dse-miR-982c-5p mature miRNA
Sequence	1 - UCUUGGACAAAUAUCAAGUAGA - 22
Evidence	experimental Illumina [1]

Mature dse-miR-982c-3p

Accession	MIMAT0039133
Description	Drosophila sechellia dse-miR-982c-3p mature miRNA
Sequence	41 - UUAUUGUUAUUUGUCCUUGAAC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250