Stem-loop dvi-mir-9539

Accession

MI0029278

Description

Drosophila virilis dvi-mir-9539 precursor miRNA

Sequence

uuaaauuauuucaauugcuugcucuauaucgucACAUUGAGACUCUGAGUGGUAGUaaggcaucuagaaaaUUGCCAUUCACAGUAUCAAUGgaaugauugcgcaauuaacauaugaaaugaaaagu
.....((((((((..((.((((.(...(((((..((((((.(((.(((((((((((..............))))))))))).))).))))))..))))).).))))....))..)))))))).....

Structure

uuaaa        au  ---c    u uau     cA      G   C           aaggca 
     uuauuuca  ug    uugc c   aucgu  CAUUGA ACU UGAGUGGUAGU      u
     ||||||||  ||    |||| |   |||||  |||||| ||| |||||||||||       
     aguaaagu  ac    aacg g   uagua  GUAACU UGA ACUUACCGUUa      c
ugaaa        au  aauu    c --u     ag      A   C           aaagau 

Annotation confidence Low

Genome context

scaffold_12855: 6284648-6284774 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9539

Mature dvi-miR-9539-5p

• Accession: MIMAT0035620
• Description: Drosophila virilis dvi-miR-9539-5p mature miRNA
• Sequence: 34 - ACAUUGAGACUCUGAGUGGUAGU - 56
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9539-3p

• Accession: MIMAT0035621
• Description: Drosophila virilis dvi-miR-9539-3p mature miRNA
• Sequence: 72 - UUGCCAUUCACAGUAUCAAUG - 92
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250