Stem-loop dvi-mir-9545

Accession

MI0029283

Description

Drosophila virilis dvi-mir-9545 precursor miRNA

Sequence

uggucgggucuuauggguUUAGGAUUGUGGCCUUUCAACGuuuuuguuuuuucauuaauaaacaUUGUCUGCGCCACAAUUCUAACcucauugggccccguuu
.....((((((.(((((.((((((((((((((...(((.(((..((((........))))))).)))...).))))))))))))).))))).)))))).....

Structure

ugguc      u     u             - UUU   C   uu    uuu 
     gggucu auggg UUAGGAUUGUGGC C   CAA Guu  uguu   u
     |||||| ||||| ||||||||||||| |   ||| |||  ||||    
     cccggg uacuc AAUCUUAACACCG G   GUU caa  auaa   c
uuugc      u     C             C UCU   a   --    uua 

Annotation confidence Low

Genome context

scaffold_12970: 9429441-9429543 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from dvi-mir-9545

Mature dvi-miR-9545-5p

• Accession: MIMAT0035630
• Description: Drosophila virilis dvi-miR-9545-5p mature miRNA
• Sequence: 19 - UUAGGAUUGUGGCCUUUCAACG - 40
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9545-3p

• Accession: MIMAT0035631
• Description: Drosophila virilis dvi-miR-9545-3p mature miRNA
• Sequence: 65 - UUGUCUGCGCCACAAUUCUAAC - 86
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250