miRBase entry: dvi-mir-9545

Stem-loop dvi-mir-9545

Accession

MI0029283

Description

Drosophila virilis dvi-mir-9545 precursor miRNA

Sequence

uggucgggucuuauggguUUAGGAUUGUGGCCUUUCAACGuuuuuguuuuuucauuaauaaacaUUGUCUGCGCCACAAUUCUAACcucauugggccccguuu
.....((((((.(((((.((((((((((((((...(((.(((..((((........))))))).)))...).))))))))))))).))))).)))))).....

Structure

ugguc      u     u             - UUU   C   uu    uuu 
     gggucu auggg UUAGGAUUGUGGC C   CAA Guu  uguu   u
     |||||| ||||| ||||||||||||| |   ||| |||  ||||    
     cccggg uacuc AAUCUUAACACCG G   GUU caa  auaa   c
uuugc      u     C             C UCU   a   --    uua

Annotation confidence Not enough data

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Genome context

scaffold_12970: 9429441-9429543 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from dvi-mir-9545

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9545-5p

Accession	MIMAT0035630
Description	Drosophila virilis dvi-miR-9545-5p mature miRNA
Sequence	19 - UUAGGAUUGUGGCCUUUCAACG - 40
Evidence	experimental Illumina [1-2]

Mature dvi-miR-9545-3p

Accession	MIMAT0035631
Description	Drosophila virilis dvi-miR-9545-3p mature miRNA
Sequence	65 - UUGUCUGCGCCACAAUUCUAAC - 86
Evidence	experimental Illumina [1-2]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250