Stem-loop dsi-mir-976

Accession

MI0011773

Description

Drosophila simulans dsi-mir-976 precursor miRNA

Sequence

cgcaugcagugucguggCAUUGGUGAGGACAUCUCcaauggauugguucucaucaUUGGAUUAGUUAUCAUCAAUGCcggugcacugcacugc
.(((((((((((..((((((((((((.(((...((((((((..((.....))))))))))...))).))))))))))))..)))))))).)))

Structure

c   -        cg            G   AUC        au  g 
 gca ugcagugu  uggCAUUGGUGA GAC   UCcaaugg  ug u
 ||| ||||||||  |||||||||||| |||   ||||||||  || u
 cgu acgucacg  gcCGUAACUACU UUG   AGGUUacu  ac c
-   c        ug            A   AUU        --  u 

Annotation confidence Not enough data

Genome context

chrX: 15018508-15018600 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-976

Mature dsi-miR-976-3p

• Accession: MIMAT0012502
• Description: Drosophila simulans dsi-miR-976-3p mature miRNA
• Sequence: 56 - UUGGAUUAGUUAUCAUCAAUGC - 77
• Evidence: experimental ; Illumina [1-2]

Mature dsi-miR-976-5p

• Accession: MIMAT0037357
• Description: Drosophila simulans dsi-miR-976-5p mature miRNA
• Sequence: 18 - CAUUGGUGAGGACAUCUC - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250