miRBase entry: bta-mir-134

Stem-loop bta-mir-134


Accession
MI0009735
Description
Bos taurus bta-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134

Literature search
2 open access papers mention bta-mir-134
(10 sentences)

Sequence

155 reads, 12 reads per million, 42 experiments
cagggugUGUGACUGGUUGACCAGAGUGGccagcacucgguucacccucugggccaccuagucaccaacccuc
.(((((..((((((((.((.((((((.((..(((.....)))..))))))))..)).))))))))..))))).

Structure
c     gU        U  -A      U  cc   a 
 agggu  GUGACUGG UG  CCAGAG GG  agc c
 |||||  |||||||| ||  |||||| ||  ||| u
 uccca  cacugauc ac  ggucuc cc  uug c
c     ac        c  cg      -  ac   g 


Annotation confidence High
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Genome context
chr21: 67871630-67871702 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from bta-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-134

Accession MIMAT0009227
Description Bos taurus bta-miR-134 mature miRNA
Sequence 8 - UGUGACUGGUUGACCAGAGUGG - 29
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125