miRBase entry: bta-mir-135b

Stem-loop bta-mir-135b


Accession
MI0009738
Description
Bos taurus bta-mir-135b precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
6 open access papers mention bta-mir-135b
(15 sentences)

Sequence

12 reads, 3 reads per million, 11 experiments
cucugcuguggccUAUGGCUUUUCAUUCCUAUGUGAuuacuguuccaaacucauguagggcuaaaagccaugggcuacagugaggggcgcgcgcc
(((.(((((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))))).(((....)))

Structure
-----------   u                   CAU          uuacug 
           cuc gcuguggccUAUGGCUUUU   UCCUAUGUGA      u
           ||| |||||||||||||||||||   ||||||||||       
           gag ugacaucggguaccgaaaa   gggauguacu      u
ccgcgcgcggg   -                   -uc          caaacc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr16: 3040637-3040731 [-]

Database links

Mature bta-miR-135b

Accession MIMAT0009229
Description Bos taurus bta-miR-135b mature miRNA
Sequence 14 - UAUGGCUUUUCAUUCCUAUGUGA - 36
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125