miRBase entry: bta-mir-136

Stem-loop bta-mir-136


Accession
MI0009739
Description
Bos taurus bta-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136

Literature search
4 open access papers mention bta-mir-136
(6 sentences)

Sequence

36547 reads, 406 reads per million, 66 experiments
uuggaugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuacgcuccaucaucgucucaaaugagucuucagaggguuccaucau
...(((((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).))))))).))))..

Structure
uug    -       g        C     UUU          uuc 
   gaug agcccuc gaggACUC AUUUG   UGAUGAUGGA   u
   |||| ||||||| |||||||| |||||   ||||||||||   u
   cuac uugggag cuucugag uaaac   gcuacuaccu   a
-ua    c       a        -     ucu          cgc 


Annotation confidence High
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Genome context
chr21: 67710178-67710269 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-136

Accession MIMAT0009230
Description Bos taurus bta-miR-136 mature miRNA
Sequence 20 - ACUCCAUUUGUUUUGAUGAUGGA - 42
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125