miRBase entry: bta-mir-141

Stem-loop bta-mir-141


Accession
MI0009742
Description
Bos taurus bta-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
15 open access papers mention bta-mir-141
(37 sentences)

Sequence

232302 reads, 5793 reads per million, 78 experiments
gaccggcucuggguccaucuuccagcacaguguuggauggucuaauggugaagcuccUAACACUGUCUGGUAAAGAUGGcccccggcugg
..((((((..(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))..))))))

Structure
ga      cu   u       --    c        -   ugg  ua 
  ccggcu  ggg ccaucuu  ccag acaguguu gga   uc  a
  ||||||  ||| |||||||  |||| |||||||| |||   ||  u
  ggucgg  ccc GGUAGAA  GGUC UGUCACAA ccu   ag  g
--      cc   -       AU    -        U   cga  ug 


Annotation confidence High
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Genome context
chr5: 104149742-104149831 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-141

Accession MIMAT0009232
Description Bos taurus bta-miR-141 mature miRNA
Sequence 58 - UAACACUGUCUGGUAAAGAUGG - 79
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125