Stem-loop sequence bta-mir-141

Accession

MI0009742 (change log)

Description

Bos taurus miR-141 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

15 open access papers mention bta-mir-141
(37 sentences)

Stem-loop

   ga      cu   u       --    c        -   ugg  ua 
5'   ccggcu  ggg ccaucuu  ccag acaguguu gga   uc  a
     ||||||  ||| |||||||  |||| |||||||| |||   ||  u
3'   ggucgg  ccc gguagaa  gguc ugucacaa ccu   ag  g
   --      cc   -       au    -        u   cga  ug 

Deep sequencing

315015 reads, 8.54e+03 reads per million, 78 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 104149742-104149831 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-141

• bta-mir-200c: chr5: 104150173-104150237 [-]
• bta-mir-141: chr5: 104149742-104149831 [-]

Database links

• EntrezGene:MIR141
• miRBase Tracker:MI0009742

Mature sequence bta-miR-141

• Accession: MIMAT0009232
• Sequence: 58 - uaacacugucugguaaagaugg - 79
• Deep sequencing: 314175 reads, 78 experiments
• Evidence: by similarity; MI0000457
• Predicted targets:
  • TargetScanVert:bta-miR-141

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).