Stem-loop bta-mir-154a

Accession

MI0009751

Description

Bos taurus bta-mir-154a precursor miRNA

Literature search

9 open access papers mention bta-mir-154a
(58 sentences)

Sequence

81 reads, 1 reads per million, 42 experiments

gcggaacuugaagaUAGGUUAUCCGUGUAGCCUUCGcuuuacuugugacgaaucauacacgguucaccuauuuuuuaguaccaa
..((.(((.((((((((((...(((((((...(((((.........).))))...)))))))...)))))))))).))).))..

Structure

gc  a   u          UAU       GCC    - uuu 
  gg acu gaagaUAGGU   CCGUGUA   UUCG c   a
  || ||| ||||||||||   |||||||   |||| |   c
  cc uga uuuuuaucca   ggcacau   aagc g   u
aa  a   u          cuu       acu    a ugu 

Annotation confidence Medium

Genome context

chr21: 67876412-67876495 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-154a

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125