miRBase entry: bta-mir-190a

Stem-loop bta-mir-190a


Accession
MI0009762
Description
Bos taurus bta-mir-190a precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
5 open access papers mention bta-mir-190a
(14 sentences)

Sequence

643 reads, 22 reads per million, 65 experiments
ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaacuauauaucaaacauauuccuacagugucuugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure
u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cguuc g gacau  uuauacaaacuauaua  ucaac    u
c     u u     cc                --     cuaa 


Annotation confidence High
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Genome context
chr10: 47479144-47479228 [-]

Database links

Mature bta-miR-190a

Accession MIMAT0009251
Description Bos taurus bta-miR-190a mature miRNA
Sequence 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125