miRBase entry: bta-mir-212

Stem-loop bta-mir-212


Accession
MI0009776
Description
Bos taurus bta-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132

Literature search
10 open access papers mention bta-mir-212
(73 sentences)

Sequence

842 reads, 30 reads per million, 64 experiments
cggagccacccugcccgggcagcgcgccggcACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucaguaacagucuccagucacggccaccgacgccuggccccgcc
.((.((......))))((((((.(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).))))).))))....

Structure
cggagccacccugccc    -  c   c   -cA  U     CU      C      ccc   c 
                gggc ag gcg cgg   CC UGGCU  AGACUG UUACUg   ggg  
                |||| || ||| |||   || |||||  |||||| ||||||   ||| c
                cccg uc cgc gcc   gg acuga  ucugac aaugac   ccc  
------------ccgc    g  -   a   acc  c     cc      -      --u   g 


Annotation confidence Not enough data
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Genome context
chr19: 23783918-23784028 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-212

Accession MIMAT0009264
Description Bos taurus bta-miR-212 mature miRNA
Sequence 32 - ACCUUGGCUCUAGACUGCUUACU - 54
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125