miRBase entry: bta-mir-296

Stem-loop bta-mir-296


Accession
MI0009786
Description
Bos taurus bta-mir-296 precursor miRNA
Gene family
MIPF0000159; mir-296

Literature search
7 open access papers mention bta-mir-296
(8 sentences)

Sequence

3742 reads, 62 reads per million, 66 experiments
aggacccuuccgGAGGGCCCCCCCCAAUCCUguugugcuugguucaGAGGGUUGGGCGGAGGCUUUCCugaagggucu
.(((((((((.((((((((.(((((((((((.(((.((...)).)))))))))))).)).)))))))).)))))))))

Structure
a         c        C  -         g   u  u 
 ggacccuuc gGAGGGCC CC CCCAAUCCU uug gc  
 ||||||||| |||||||| || ||||||||| ||| || u
 ucugggaag CCUUUCGG GG GGGUUGGGA Gac ug  
-         u        A  C         -   u  g 


Annotation confidence High
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Genome context
chr13: 58333114-58333191 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-296
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-296-3p

Accession MIMAT0009273
Description Bos taurus bta-miR-296-3p mature miRNA
Sequence 47 - GAGGGUUGGGCGGAGGCUUUCC - 68
Evidence experimental
Illumina [2]

Mature bta-miR-296-5p

Accession MIMAT0026918
Description Bos taurus bta-miR-296-5p mature miRNA
Sequence 13 - GAGGGCCCCCCCCAAUCCU - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125

  2. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103