miRBase entry: bta-mir-301a

Stem-loop bta-mir-301a


Accession
MI0009789
Description
Bos taurus bta-mir-301a precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
5 open access papers mention bta-mir-301a
(15 sentences)

Sequence

29028 reads, 341 reads per million, 72 experiments
acugcuaacgaaugcucugacuuuauugcacuacuguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCAUcugaaagcag
.(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))

Structure
a     aa  a     c    ---u          a  -  acu 
 cugcu  cg augcu ugac    uuauugcacu cu gu   u
 |||||  || ||||| ||||    |||||||||| || ||    
 gacga  gu UACGA ACUG    GAUAACGUGA ga cg   u
-     aa  c     A    UUAU          C  u  aca 


Annotation confidence Not enough data
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Genome context
chr19: 10448153-10448237 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-301a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-301a

Accession MIMAT0009276
Description Bos taurus bta-miR-301a mature miRNA
Sequence 51 - CAGUGCAAUAGUAUUGUCAAAGCAU - 75
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125