Stem-loop bta-mir-330

Accession

MI0009803

Description

Bos taurus bta-mir-330 precursor miRNA mir-330

Gene
family

RF00770; mir-330

Literature search

28 open access papers mention bta-mir-330
(173 sentences)

Sequence

95439 reads, 48.0 reads per million, 316 experiments

cuucggcgaucacugccUCUCUGGGCCUGUGUCUUAGGCUcugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAGgcagcgcucagcuc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure

cuuc   -  u a           --    -    U   AG    ugcaa 
    ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCUc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ucg cu g gacgGAGAGAC  CCGG ACAC GAA  CGag     u
---c   a  c c           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

18: 53226503-53226596 [-]

Mature bta-miR-330-5p

• Accession: MIMAT0061002
• Description: Bos taurus bta-miR-330-5p mature miRNA
• Sequence: 18 - UCUCUGGGCCUGUGUCUUAGGCU - 40
• Evidence: not_experimental

Mature bta-miR-330-3p

• Accession: MIMAT0009290
• Description: Bos taurus bta-miR-330-3p mature miRNA
• Sequence: 57 - GCAAAGCACACGGCCUGCAGAGAG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125