miRBase entry: bta-mir-33b

Stem-loop bta-mir-33b


Accession
MI0009808
Description
Bos taurus bta-mir-33b precursor miRNA
Gene family
MIPF0000070; mir-33

Literature search
15 open access papers mention bta-mir-33b
(27 sentences)

Sequence

1337 reads, 45 reads per million, 73 experiments
gcgggcggccccgcgGUGCAUUGCUGUUGCAUUGCaugugugaggcaggugcagugccucggcagugcagcccggagccggccccuggcaccgc
((((.((((.(((.((((((((((((..(((((((((.(((...))).)))))))))..)))))))))).))))).))))(((...))).))))

Structure
    ---------g    c   c  -          UU         g   g 
gcgg          cggc ccg gG UGCAUUGCUG  GCAUUGCau ugu  
||||          |||| ||| || ||||||||||  ||||||||| ||| a
cgcc          gccg ggc cc acgugacggc  cgugacgug acg  
    acgguccccg    a   -  g          uc         g   g 


Annotation confidence Not enough data
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Genome context
chr19: 35416499-35416592 [+]

Database links

Mature bta-miR-33b

Accession MIMAT0009295
Description Bos taurus bta-miR-33b mature miRNA
Sequence 16 - GUGCAUUGCUGUUGCAUUGC - 35
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125