Stem-loop sequence bta-mir-33b

Accession

MI0009808 (change log)

Description

Bos taurus miR-33b stem-loop

Gene family

MIPF0000070; mir-33

Literature search

15 open access papers mention bta-mir-33b
(27 sentences)

Stem-loop

   ---------gcggg    c   c  -          uu         g  u 
5'               cggc ccg gg ugcauugcug  gcauugcau ug g
                 |||| ||| || ||||||||||  ||||||||| || a
3'               gccg ggc cc acgugacggc  cgugacgug ac g
   cgccacgguccccg    a   -  g          uc         g  g 

Deep sequencing

1507 reads, 24.3 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 35416499-35416592 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000010372 ; SREBF1-201; intron 16

Database links

• EntrezGene:MIR33B
• RNAcentral:URS000075C3FF_9913
• miRBase Tracker:MI0009808

Mature sequence bta-miR-33b

• Accession: MIMAT0009295
• Sequence: 16 - gugcauugcuguugcauugc - 35
• Deep sequencing: 1464 reads, 73 experiments
• Evidence: by similarity; MI0003646
• Predicted targets:
  • TargetScanVert:bta-miR-33b

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).