miRBase entry: bta-mir-379

Stem-loop bta-mir-379


Accession
MI0009820
Description
Bos taurus bta-mir-379 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
6 open access papers mention bta-mir-379
(11 sentences)

Sequence

2804 reads, 43 reads per million, 63 experiments
ugguuccugcagagaUGGUAGACUAUGGAACGUAGGcuuugugauuuuugaccuauguaacaugguccacuaacucucaguaucca
(((...(((.((((.((((.(((((((..((((((((............).)))))))..))))))).)))).)))))))...)))

Structure
   uuc   c    a    A       GA       - uuugu 
ugg   cug agag UGGU GACUAUG  ACGUAGG c     g
|||   ||| |||| |||| |||||||  ||||||| |      
acc   gac ucuc auca cugguac  uguaucc g     a
   uau   -    a    c       aa       a uuuuu 


Annotation confidence High
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Genome context
chr21: 67840242-67840327 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from bta-mir-379
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-379

Accession MIMAT0009306
Description Bos taurus bta-miR-379 mature miRNA
Sequence 16 - UGGUAGACUAUGGAACGUAGG - 36
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125