miRBase entry: bta-mir-432

Stem-loop bta-mir-432


Accession
MI0009831
Description
Bos taurus bta-mir-432 precursor miRNA
Gene family
MIPF0000211; mir-432

Literature search
6 open access papers mention bta-mir-432
(16 sentences)

Sequence

3413 reads, 47 reads per million, 64 experiments
gcaugacuccuccaagUCUUGGAGUAGGUCAUUGGGUGGauccuuuauuucccuaugugggccacuggauggcuccuccaugucuuggcg
...........(((((.(.(((((..(((((((.(((((.(((..(((......))).)))))))).))))))).))))).).)))))..

Structure
gcaugacuccu     U U     UA       G     a   uu   uu 
           ccaag C UGGAG  GGUCAUU GGUGG ucc  uau  c
           ||||| | |||||  ||||||| ||||| |||  |||   
           gguuc g accuc  ucgguag ucacc ggg  gua  c
---------gc     u u     -c       g     -   -u   uc 


Annotation confidence High
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Genome context
chr21: 67709994-67710083 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-432
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-432

Accession MIMAT0009317
Description Bos taurus bta-miR-432 mature miRNA
Sequence 17 - UCUUGGAGUAGGUCAUUGGGUGG - 39
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125