miRBase entry: bta-mir-541

Stem-loop bta-mir-541


Accession
MI0009858
Description
Bos taurus bta-mir-541 precursor miRNA
Gene family
MIPF0000213; mir-541

Literature search
3 open access papers mention bta-mir-541
(3 sentences)

Sequence

900 reads, 23 reads per million, 62 experiments
acgucagggaaaggauucugcugucggucccacuccaaaguucaaaaaaugggUGGUGGGCACAGAAUCCGGCCUcugcuugug
(((.(((((...((((((((.((((.(..((((.(((............)))))))).))))))))))))...)))))..))).

Structure
-   -u     aaa        c    g uc    u   aaguu 
 acg  caggg   ggauucug uguc g  ccac cca     c
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     CGG        -    G --    -   aaaaa 


Annotation confidence High
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Genome context
chr21: 67880717-67880800 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from bta-mir-541
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-541

Accession MIMAT0009343
Description Bos taurus bta-miR-541 mature miRNA
Sequence 54 - UGGUGGGCACAGAAUCCGGCCU - 75
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125