miRBase entry: mmu-mir-1306

Stem-loop mmu-mir-1306


Accession
MI0009935
Symbol
MGI: Mir1306
Description
Mus musculus mmu-mir-1306 precursor miRNA
Gene family
MIPF0000531; mir-1306

Literature search
8 open access papers mention mmu-mir-1306
(27 sentences)

Sequence

9732 reads, 111 reads per million, 102 experiments
cagucucCACCACCUCCCCUGCAAACGUCCagugaugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaguccg
..((((.(((((((......((.((((((((...((......))..)))))))).))...)))))))..))))......

Structure
----ca    -c       UCCCCU  A        gug  gc 
      gucu  CACCACC      GC AACGUCCa   au  a
      ||||  |||||||      || ||||||||   ||   
      cagG  GUGGUGG      CG UUGCAggu   ug  g
gccuga    UA       ---UCU  G        -aa  ga 


Annotation confidence High
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Genome context
chr16: 18284239-18284317 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-1306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-1306-3p

Accession MIMAT0009411
Description Mus musculus mmu-miR-1306-3p mature miRNA
Sequence 50 - ACGUUGGCUCUGGUGGUGAUG - 70
Evidence experimental
Illumina [1-3]
Database links
Predicted targets

Mature mmu-miR-1306-5p

Accession MIMAT0019136
Description Mus musculus mmu-miR-1306-5p mature miRNA
Sequence 8 - CACCACCUCCCCUGCAAACGUCC - 30
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 18849523
    In-depth characterization of the microRNA transcriptome in a leukemia progression model
    "Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
    "Genome Res (2008) 18:1787-1797

  3. PubMed ID: 20935160
    Next-generation sequencing identifies the natural killer cell microRNA transcriptome
    "Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER"
    "Genome Res (2010) 20:1590-1604