miRBase entry: mmu-mir-1960

Stem-loop mmu-mir-1960


Accession
MI0009957
Symbol
MGI: Mir1960
Description
Mus musculus mmu-mir-1960 precursor miRNA

Literature search
1 open access papers mention mmu-mir-1960
(2 sentences)

Sequence

1266 reads, 18 reads per million, 66 experiments
cagagugagcagCCAGUGCUGUUAGAAGAGGGCUgagagcagggagagcucucuucugcagcacugacuuuuccucug
(((((.(((.((.(((((((((.(((((((((((............)))))))))))))))))))).)).))))))))

Structure
     u   c  C         U           gagag 
cagag gag ag CAGUGCUGU AGAAGAGGGCU     c
||||| ||| || ||||||||| |||||||||||      
gucuc cuu uc gucacgacg ucuucucucga     a
     -   u  a         -           gaggg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr5: 30170739-30170816 [+]

Database links

Mature mmu-miR-1960

Accession MIMAT0009433
Description Mus musculus mmu-miR-1960 mature miRNA
Sequence 13 - CCAGUGCUGUUAGAAGAGGGCU - 34
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 18849523
    In-depth characterization of the microRNA transcriptome in a leukemia progression model
    "Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK"
    "Genome Res (2008) 18:1787-1797