Stem-loop osa-MIR1846c

Accession

MI0010321

Description

Oryza sativa osa-MIR1846c precursor miRNA

Gene family

MIPF0000577; MIR1846

Literature search

5 open access papers mention osa-MIR1846c
(6 sentences)

Sequence

2 reads, 1 reads per million, 1 experiments

augagccgccggaucucccAGUGAGGAGGCCGGGGCCGCUgaauccggUGACCCCGGUCUGCUCGCUGGcggauccggcgcaaaga
....((.(((((((((.((((((((.(((((((((.(((((....))))).))))))))).)))))))).))))))))))).....

Structure

-auga  c         c        G         C     a 
     gc gccggaucu ccAGUGAG AGGCCGGGG CGCUg a
     || ||||||||| |||||||| ||||||||| |||||  
     cg cggccuagg GGUCGCUC UCUGGCCCC GUggc u
agaaa  -         c        G         A     c 

Annotation confidence Not enough data

Genome context

Chr12: 270780-270865 [+]

Mature osa-miR1846c-5p

• Accession: MIMAT0009165
• Description: Oryza sativa osa-miR1846c-5p mature miRNA
• Sequence: 20 - AGUGAGGAGGCCGGGGCCGCU - 40
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1846c-3p

• Accession: MIMAT0009166
• Description: Oryza sativa osa-miR1846c-3p mature miRNA
• Sequence: 49 - UGACCCCGGUCUGCUCGCUGG - 69
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930