Stem-loop sequence bta-mir-1248-2

Accession

MI0010483 (change log)

Description

Bos taurus miR-1248-2 stem-loop

Gene family

MIPF0000622; mir-1248

Literature search

1 open access papers mention bta-mir-1248-2
(1 sentences)

Stem-loop

   --------uauac        a   gc   g     ---aa               a 
5'              cuucuugu uaa  acu ugcua     auuacagaaaccaag u
                |||||||| |||  ||| |||||     ||||||||||||||| a
3'              gaagaaca auu  uga acgau     uaauguuuuugguuc g
   acgucaaggagaa        c   -a   g     cguaa               c 

Deep sequencing

26 reads, 0 reads per million, 18 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr10: 58304556-58304660 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000062181 ; SNORA81-201; exon 1

  ENSBTAT00000008516 ; MYO5A-201; intron 28

Database links

• EntrezGene:MIR1248-2
• miRBase Tracker:MI0010483

Mature sequence bta-miR-1248

• Accession: MIMAT0009972
• Sequence: 4 - accuucuuguauaagcacugugcuaaa - 30
• Deep sequencing: 28 reads, 10 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:bta-miR-1248

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).