Stem-loop zma-MIR396c

Accession

MI0010569

Description

Zea mays zma-MIR396c precursor miRNA

Literature search

23 open access papers mention zma-MIR396c
(85 sentences)

Sequence

17740 reads, 24194.0 reads per million, 115 experiments

cgggcaugcuUUCCACAGGCUUUCUUGAACUGugaacucgugggugguggugguaugucggauggaaugcuugg
(((((((.((.((((((.(((.((....(((.((....))..)))...)).))).))).))).)).))))))).

Structure

-       g  U   -   G   U  UUGA   -G  a 
 cgggcau cu UCC ACA GCU UC    ACU  ug a
 ||||||| || ||| ||| ||| ||    |||  ||  
 guucgua gg agg ugu ugg gg    ugg  gc c
g       a  u   c   a   u  -ugg   gu  u 

Annotation confidence Not enough data

Genome context

2: 2228628-2228701 [-]

Mature zma-miR396c-5p

• Accession: MIMAT0010076
• Description: Zea mays zma-miR396c-5p mature miRNA
• Sequence: 11 - UUCCACAGGCUUUCUUGAACUG - 32
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930