Stem-loop zma-MIR396d

Accession

MI0010570

Description

Zea mays zma-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

23 open access papers mention zma-MIR396d
(81 sentences)

Sequence

4109 reads, 9235 reads per million, 12 experiments

cgggcaugcuUUCCACAGGCUUUCUUGAACUGugaacucgugggcgugguggugguggugcuggugcugggugu
(.(((((.....((((..(((.((.((..(((......)).)..)).)).))).)))).....))))).)....

Structure

---- g     gcuUU    AG   U  U  AA -  ug 
    c ggcau     CCAC  GCU UC UG  C UG  a
    | |||||     ||||  ||| || ||  | ||   
    g ucgug     ggug  ugg gg gc  g gc  a
ugug g     gucgu    -g   u  u  gg u  uc 

Annotation confidence Not enough data

Genome context

chr10: 148727703-148727776 [+]

Mature zma-miR396d

• Accession: MIMAT0010077
• Description: Zea mays zma-miR396d mature miRNA
• Sequence: 11 - UUCCACAGGCUUUCUUGAACUG - 32
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930