miRBase entry: gma-MIR396c

Stem-loop gma-MIR396c


Accession
MI0010572
Description
Glycine max gma-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
25 open access papers mention gma-MIR396c
(149 sentences)

Sequence

caacaaguccuguuaugcuuUUCCACAGCUUUCUUGAACUUcuuaugccuagugcaauuauugauguggcauagaaguuuaagaaaaauguggaaaaacaugucaaaucuaggacuu
....((((((((.((((.(((((((((..((((((((((((((.(((((..((.(((...)))))..)))))))))))))))))))..))))))))).)))).......))))))))

Structure
caac        ------u    c         GC              u     ua  g   u 
    aaguccug       uaug uuUUCCACA  UUUCUUGAACUUcu augcc  gu caa  
    ||||||||       |||| |||||||||  |||||||||||||| |||||  || ||| u
    uucaggau       guac aaaaggugu  aaagaauuugaaga uacgg  ua guu  
----        cuaaacu    a         aa              -     ug  -   a 


Annotation confidence Not enough data
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Genome context
chr13: 45239131-45239247 [+]

Database links

Mature gma-miR396c

Accession MIMAT0010079
Description Glycine max gma-miR396c mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUU - 41
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 19084500
    Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
    "Biochem Biophys Res Commun (2009) 378:799-803

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506