miRBase entry: tca-bantam

Stem-loop tca-bantam


Accession
MI0010584
Description
Tribolium castaneum tca-bantam precursor miRNA
Gene family
MIPF0000153; bantam

Literature search
2 open access papers mention tca-bantam
(4 sentences)

Sequence

ucagcgagacgaaaCUGGUUUUCACAGUGAUUUGACAGauauauuugauucUGAGAUCAUUGUGAAAGCUGAUUuuguuca
.......(((((((.((((((((((((((((((..((((..........)))))))))))))))))))))).)))))))..AAACGAUGCCGGCGGCAGCUCAGCGUGUGUCGUACUGAUAGUGUUAUCACUAGCUAUCAUAAGACACACGCGGCUAUCGCCGGUCUCUCCU

Structure
Error: Sequence and structure lengths do not match for tca-bantam.


Annotation confidence Not enough data
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Genome context
ChLG3: 17668731-17668811 [-]

Database links

Mature tca-bantam-3p

Accession MIMAT0010091
Description Tribolium castaneum tca-bantam-3p mature miRNA
Sequence 52 - UGAGAUCAUUGUGAAAGCUGAUU - 74
Evidence experimental
SOLID [1]
Database links

Mature tca-bantam-5p

Accession MIMAT0019178
Description Tribolium castaneum tca-bantam-5p mature miRNA
Sequence 15 - CUGGUUUUCACAGUGAUUUGACAG - 38
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696