miRBase entry: ssc-mir-101-2

Stem-loop ssc-mir-101-2


Accession
MI0010679
Description
Sus scrofa ssc-mir-101-2 precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
12 open access papers mention ssc-mir-101-2
(26 sentences)

Sequence

7349 reads, 2342 reads per million, 13 experiments
ggcugcccuggcucaguuaucacagugcugaugcuguccauucuaaaggUACAGUACUGUGAUAACUGAAggauggcagcc
(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))

Structure
       cuggc                  a    gucca 
ggcugcc     ucaguuaucacagugcug ugcu     u
|||||||     |||||||||||||||||| ||||      
ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
       uaggA                  -    aaauc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 135736115-135736195 [+]

Database links

Mature ssc-miR-101

Accession MIMAT0010185
Description Sus scrofa ssc-miR-101 mature miRNA
Sequence 50 - UACAGUACUGUGAUAACUGAA - 70
Evidence experimental
454 [1], Illumina [2,4-5], cloned [3]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100