miRBase entry: ssc-mir-133a-1

Stem-loop ssc-mir-133a-1


Accession
MI0010681
Description
Sus scrofa ssc-mir-133a-1 precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
40 open access papers mention ssc-mir-133a-1
(193 sentences)

Sequence

27 reads, 33 reads per million, 9 experiments
cgggacccaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguugaauggauUUGGUCCCCUUCAACCAGCUGuagcugcgcauugacagcgccg
((((.....(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))).....).)))

Structure
   - accca     uuu    a       AA  U  A        aacug 
cgg g     aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
||| |     |||||   |||| |||||||  || || ||||||||      
gcc c     uuacg   cgau UCGACCA  UU CC UGGUUuag     u
   g gacag     cgu    G       AC  C  C        guaag 


Annotation confidence Not enough data
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Genome context
chr17: 69274653-69274755 [-]

Database links

Mature ssc-miR-133a-5p

Accession MIMAT0015299
Description Sus scrofa ssc-miR-133a-5p mature miRNA
Sequence 23 - AGCUGGUAAAAUGGAACCAAAU - 44
Evidence experimental
cloned [3], Illumina [4]

Mature ssc-miR-133a-3p

Accession MIMAT0010186
Description Sus scrofa ssc-miR-133a-3p mature miRNA
Sequence 61 - UUGGUCCCCUUCAACCAGCUG - 81
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100