miRBase entry: ssc-mir-1

Stem-loop ssc-mir-1


Accession
MI0010682
Description
Sus scrofa ssc-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
47 open access papers mention ssc-mir-1
(281 sentences)

Sequence

305 reads, 194 reads per million, 14 experiments
ccgguugacguaccugcuugggggacauacuucuuuaugugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAuuucaggcugggaacucucaccgg
(((((.((.((.(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).))))..)))))

Structure
     -u  c  a   -        g                gc     ---   a 
ccggu  ga gu ccu gcuugggg acauacuucuuuaugu  ccaua   ugg c
|||||  || || ||| |||||||| ||||||||||||||||  |||||   ||| c
ggcca  cu ca ggg cggacuuu UGUAUGAAGAAAUGUA  GGUau   auc u
     cu  -  a   u        A                -A     cga   g 


Annotation confidence Not enough data
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Genome context
chr17: 69285393-69285500 [-]

Database links

Mature ssc-miR-1

Accession MIMAT0010187
Description Sus scrofa ssc-miR-1 mature miRNA
Sequence 64 - UGGAAUGUAAAGAAGUAUGUA - 84
Evidence experimental
454 [1], Illumina [2,4-5], cloned [3]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100