miRBase entry: ssc-mir-450a

Stem-loop ssc-mir-450a


Accession
MI0010683
Description
Sus scrofa ssc-mir-450a precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
4 open access papers mention ssc-mir-450a
(4 sentences)

Sequence

392 reads, 141 reads per million, 10 experiments
gucugucaaagaaagaugcuaaacuggUUUUGCGAUGUGUUCCUAAUAUgcaguauaaauauauugggagcauuuugcaugcaugguuuuguaucacuauacagau
((((((...((...(((((.((((((....(((((.((((((((((((((.........)))))))))))))).)))))....)))))).))))).))..))))))

Structure
      caa  aaa     u      gUUU     U              cag 
gucugu   ag   gaugc aaacug    UGCGA GUGUUCCUAAUAUg   u
||||||   ||   ||||| ||||||    ||||| ||||||||||||||   a
uagaca   uc   cuaug uuuggu    acguu uacgaggguuauau   u
      -ua  --a     u      acgu     u              aaa 


Annotation confidence Not enough data
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Genome context
chrUScaf3177: 4173-4278 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-450a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-450a

Accession MIMAT0010188
Description Sus scrofa ssc-miR-450a mature miRNA
Sequence 28 - UUUUGCGAUGUGUUCCUAAUAU - 49
Evidence experimental
454 [1], Illumina [2-3]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328