miRBase entry: ssc-mir-30a

Stem-loop ssc-mir-30a


Accession
MI0010688
Description
Sus scrofa ssc-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
24 open access papers mention ssc-mir-30a
(60 sentences)

Sequence

6268 reads, 1861 reads per million, 15 experiments
ucccugcgacagugagcggcUGUAAACAUCCUCGACUGGAAGcugugaggcugaagacgggCUUUCAGUCGGAUGUUUGCAGCcgccgacugccucccgcaucagga
(((.((((.((((..((((((((((((((((..(((((((((((((..........)).)))))))))))))))))))))))))))..)))).....))))...)))

Structure
   --c    ----a    ga                UC           -  gagg 
ucc   ugcg     cagu  gcggcUGUAAACAUCC  GACUGGAAGcu gu    c
|||   ||||     ||||  ||||||||||||||||  ||||||||||| ||     
agg   acgc     guca  cgcCGACGUUUGUAGG  CUGACUUUCgg ca    u
   acu    ccucc    gc                --           g  gaag 


Annotation confidence High
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Genome context
chr1: 57750736-57750842 [-]

Database links

Mature ssc-miR-30a-5p

Accession MIMAT0010193
Description Sus scrofa ssc-miR-30a-5p mature miRNA
Sequence 21 - UGUAAACAUCCUCGACUGGAAG - 42
Evidence experimental
454 [1], Illumina [2,4-5], cloned [3]

Mature ssc-miR-30a-3p

Accession MIMAT0015300
Description Sus scrofa ssc-miR-30a-3p mature miRNA
Sequence 62 - CUUUCAGUCGGAUGUUUGCAGC - 83
Evidence experimental
Illumina [2,4-5]

References

  1. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100