Stem-loop sequence gma-MIR167e

Accession

MI0010725 (change log)

Description

Glycine max miR167e stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

26 open access papers mention gma-MIR167e
(195 sentences)

Stem-loop

         -a  ----     c  u           g        uaa   c  u ac 
5' ucaugc  cc    acuac ag ugaagcugcca caugaucu   cuu cc c  u
   ||||||  ||    ||||| || ||||||||||| ||||||||   ||| || |  u
3' aguacg  gg    ugaug uc acuuugacggu guacuaga   gaa gg g  g
         cc  ucgu     a  c           -        cua   a  u cc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr20: 39002092-39002200 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR167e

• gma-MIR167i: chr20: 39002038-39002188 [-]
• gma-MIR167e: chr20: 39002092-39002200 [+]

Database links

• miRBase Tracker:MI0010725

Mature sequence gma-miR167e

• Accession: MIMAT0011196
• Sequence: 19 - ugaagcugccagcaugaucuu - 39
• Evidence: experimental; cloned [1], Northern [1], Illumina [2], 454 [3]

References

1. PMID:19084500 "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules" Wang Y, Li P, Cao X, Wang X, Zhang A, Li X Biochem Biophys Res Commun. 378:799-803(2009).
2. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).
3. PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean" Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL J Exp Bot. 62:2495-2506(2011).