miRBase entry: sme-mir-2167

Stem-loop sme-mir-2167

Accession

MI0010805

Description

Schmidtea mediterranea sme-mir-2167 precursor miRNA

Sequence

ugugaaugcaauucuaucuuugaaagacaagucuuauacauucuuagugucaaacauccaagUGUGUUAAGCUGGUCUUUCAGAgcaugaauucguuaaucguc
....((((.(((((...(((((((((((.((.((((.((((.(((.((((...))))..))).)))))))))).)))))))))))...))))))))).......

Structure

---ugug    c     uau           a  u    u    u   -a    c 
       aaug aauuc   cuuugaaagac ag cuua acau cuu  gugu  
       |||| |||||   ||||||||||| || |||| |||| |||  |||| a
       uugc uuaag   gAGACUUUCUG UC GAAU UGUG gaa  uaca  
cugcuaa    -     uac           G  -    -    U   cc    a

Annotation confidence Not enough data

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Genome context

Contig272: 56602-56705 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2167

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sme-miR-2167

Accession	MIMAT0011264
Description	Schmidtea mediterranea sme-miR-2167 mature miRNA
Sequence	63 - UGUGUUAAGCUGGUCUUUCAGA - 84
Evidence	experimental 454 [1], Illumina [1]

References

PubMed ID: 19564616
High-resolution profiling and discovery of planarian small RNAs
"Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
"Proc Natl Acad Sci U S A (2009) 106:11546-11551