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High-resolution profiling and discovery of planarian small RNAs |
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|---|---|
| PubMed ID | 19564616 |
| Authors | "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N" |
| Journal | "Proc Natl Acad Sci U S A |
| Volume | 106 |
| Pages | 11546-11551 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| sme-bantam-a | MI0005119 | None | gb|NNSW01000048.1| | 1523213 | 1523276 | - | High |
| sme-bantam-b | MI0005120 | None | gb|NNSW01000024.1| | 5777392 | 5777470 | + | High |
| sme-bantam-c-1 | MI0005121 | None | gb|NNSW01000102.1| | 1106008 | 1106072 | - | High |
| sme-let-7a-1 | MI0005122 | None | gb|NNSW01000140.1| | 182785 | 182869 | + | High |
| sme-let-7b | MI0005123 | None | gb|NNSW01001095.1| | 59957 | 60037 | + | High |
| sme-let-7c | MI0005124 | None | gb|NNSW01000016.1| | 3109634 | 3109728 | - | Medium |
| sme-lin-4 | MI0005125 | None | gb|NNSW01000076.1| | 2511113 | 2511209 | - | High |
| sme-mir-1a | MI0005128 | None | gb|NNSW01000005.1| | 4406436 | 4406509 | + | High |
| sme-mir-1b | MI0005129 | None | gb|NNSW01000241.1| | 658551 | 658632 | - | High |
| sme-mir-1c | MI0005130 | None | gb|NNSW01000241.1| | 653754 | 653832 | - | High |
| sme-mir-2a-1 | MI0005131 | None | gb|NNSW01000035.1| | 577868 | 577958 | + | High |
| sme-mir-2a-2 | MI0005132 | None | gb|NNSW01000001.1| | 13481731 | 13481811 | + | High |
| sme-mir-2b | MI0005133 | None | gb|NNSW01000014.1| | 3096414 | 3096490 | + | High |
| sme-mir-2c | MI0005134 | None | gb|NNSW01000006.1| | 2195568 | 2195660 | + | High |
| sme-mir-2d | MI0005135 | None | gb|NNSW01000131.1| | 1191283 | 1191390 | + | High |
| sme-mir-7a | MI0005136 | None | gb|NNSW01000009.1| | 6662366 | 6662436 | + | High |
| sme-mir-7b | MI0005137 | None | gb|NNSW01000037.1| | 3421425 | 3421534 | - | High |
| sme-mir-7c | MI0005138 | None | gb|NNSW01000062.1| | 2478787 | 2478878 | + | High |
| sme-mir-8a | MI0005139 | None | gb|NNSW01000053.1| | 2041046 | 2041115 | - | High |
| sme-mir-10b | MI0005140 | None | gb|NNSW01000031.1| | 3745141 | 3745244 | + | High |
| sme-mir-12 | MI0005141 | None | gb|NNSW01000015.1| | 155728 | 155831 | - | High |
| sme-mir-13 | MI0005142 | None | gb|NNSW01000131.1| | 1191538 | 1191597 | + | High |
| sme-mir-745 | MI0005143 | None | gb|NNSW01000224.1| | 108928 | 109020 | + | High |
| sme-mir-746 | MI0005144 | None | gb|NNSW01000203.1| | 962292 | 962419 | + | High |
| sme-mir-31a | MI0005145 | None | gb|NNSW01001438.1| | 26756 | 26854 | + | High |
| sme-mir-31b-1 | MI0005146 | None | gb|NNSW01000043.1| | 2461887 | 2461971 | - | High |
| sme-mir-36a | MI0005147 | None | gb|NNSW01000706.1| | 45146 | 45231 | - | High |
| sme-mir-61a | MI0005148 | None | gb|NNSW01000252.1| | 319021 | 319124 | - | High |
| sme-mir-71a-1 | MI0005149 | None | gb|NNSW01000035.1| | 577768 | 577851 | + | High |
| sme-mir-71a-2 | MI0005150 | None | gb|NNSW01000001.1| | 13481638 | 13481715 | + | High |
| sme-mir-71b | MI0005151 | None | gb|NNSW01000131.1| | 1191173 | 1191272 | + | High |
| sme-mir-71c | MI0005152 | None | gb|NNSW01000006.1| | 2195468 | 2195549 | + | High |
| sme-mir-79 | MI0005153 | None | gb|NNSW01000017.1| | 1530983 | 1531075 | - | High |
| sme-mir-87a | MI0005154 | None | gb|NNSW01000072.1| | 3052471 | 3052565 | - | High |
| sme-mir-87b | MI0005155 | None | gb|NNSW01000183.1| | 1003259 | 1003366 | + | High |
| sme-mir-92 | MI0005156 | None | gb|NNSW01000068.1| | 526525 | 526608 | - | High |
| sme-mir-124a | MI0005157 | None | gb|NNSW01000335.1| | 158392 | 158474 | - | High |
| sme-mir-124b | MI0005158 | None | gb|NNSW01001128.1| | 50674 | 50757 | + | High |
| sme-mir-124c-1 | MI0005159 | None | gb|NNSW01000029.1| | 2250616 | 2250700 | - | High |
| sme-mir-125a | MI0005160 | None | gb|NNSW01000015.1| | 6805731 | 6805825 | + | High |
| sme-mir-125b | MI0005161 | None | gb|NNSW01000057.1| | 685959 | 686049 | - | High |
| sme-mir-184 | MI0005163 | None | gb|NNSW01000012.1| | 7152785 | 7152874 | - | High |
| sme-mir-190a | MI0005164 | None | gb|NNSW01000018.1| | 365775 | 365848 | + | High |
| sme-mir-190b | MI0005165 | None | gb|NNSW01000083.1| | 666733 | 666820 | - | High |
| sme-mir-747 | MI0005166 | None | gb|NNSW01000007.1| | 5198943 | 5199034 | + | High |
| sme-mir-219 | MI0005167 | None | gb|NNSW01000387.1| | 101902 | 101999 | + | High |
| sme-mir-277a | MI0005168 | None | gb|NNSW01001482.1| | 11347 | 11437 | - | High |
| sme-mir-277b | MI0005169 | None | gb|NNSW01001482.1| | 11645 | 11725 | - | High |
| sme-mir-277c | MI0005170 | None | gb|NNSW01000268.1| | 448704 | 448791 | - | High |
| sme-mir-278 | MI0005171 | None | gb|NNSW01000106.1| | 1244675 | 1244772 | + | High |
| sme-mir-281 | MI0005172 | None | gb|NNSW01001460.1| | 7289 | 7384 | + | High |
| sme-mir-67 | MI0005173 | None | gb|NNSW01000109.1| | 927805 | 927882 | + | High |
| sme-mir-748 | MI0005174 | None | gb|NNSW01000155.1| | 107003 | 107081 | - | High |
| sme-mir-749 | MI0005175 | None | gb|NNSW01000040.1| | 4725804 | 4725895 | + | Medium |
| sme-mir-750 | MI0005176 | None | gb|NNSW01000064.1| | 240572 | 240676 | - | High |
| sme-mir-751 | MI0005177 | None | gb|NNSW01000027.1| | 4369889 | 4369973 | - | - |
| sme-mir-752 | MI0005178 | None | gb|NNSW01000131.1| | 1191395 | 1191508 | + | High |
| sme-mir-753a | MI0005179 | None | gb|NNSW01000319.1| | 89904 | 89980 | + | High |
| sme-mir-754a | MI0005180 | None | gb|NNSW01000050.1| | 3677239 | 3677311 | + | Medium |
| sme-mir-755 | MI0005181 | None | gb|NNSW01000064.1| | 240460 | 240531 | - | High |
| sme-mir-756 | MI0005182 | None | gb|NNSW01000125.1| | 1007308 | 1007402 | + | High |
| sme-mir-277d | MI0005183 | None | gb|NNSW01000268.1| | 448821 | 448901 | - | High |
| sme-mir-10a | MI0010763 | None | gb|NNSW01000001.1| | 11242762 | 11242854 | + | High |
| sme-mir-2148 | MI0010764 | None | gb|NNSW01001126.1| | 81597 | 81692 | + | High |
| sme-let-7d | MI0010765 | None | gb|NNSW01000007.1| | 6243454 | 6243552 | + | Medium |
| sme-mir-753b | MI0010766 | None | gb|NNSW01000044.1| | 3941900 | 3941990 | - | High |
| sme-mir-61b | MI0010767 | None | gb|NNSW01000037.1| | 4595279 | 4595374 | - | High |
| sme-mir-87c | MI0010768 | None | gb|NNSW01000019.1| | 1464517 | 1464615 | + | High |
| sme-mir-2149 | MI0010769 | None | gb|NNSW01000053.1| | 1164847 | 1164948 | - | Medium |
| sme-mir-2147a | MI0010770 | None | gb|NNSW01001809.1| | 108489 | 108585 | + | - |
| sme-mir-2150 | MI0010771 | None | gb|NNSW01000010.1| | 8121427 | 8121551 | + | Medium |
| sme-mir-2151 | MI0010772 | None | gb|NNSW01000003.1| | 1859457 | 1859546 | + | High |
| sme-mir-2152 | MI0010773 | None | gb|NNSW01000428.1| | 30039 | 30125 | - | Low |
| sme-mir-2153 | MI0010774 | None | gb|NNSW01000077.1| | 813960 | 814081 | - | Low |
| sme-mir-87d | MI0010775 | None | gb|NNSW01001696.1| | 50845 | 50949 | + | High |
| sme-mir-754b-1 | MI0010776 | None | gb|NNSW01000051.1| | 796246 | 796339 | + | High |
| sme-mir-754c-1 | MI0010777 | None | gb|NNSW01000162.1| | 1192385 | 1192477 | + | High |
| sme-mir-124d | MI0010778 | None | gb|NNSW01000504.1| | 62019 | 62112 | - | High |
| sme-mir-124e | MI0010779 | None | gb|NNSW01000020.1| | 1711750 | 1711842 | - | High |
| sme-mir-8b | MI0010780 | None | gb|NNSW01000077.1| | 1841758 | 1841855 | + | Medium |
| sme-mir-1993 | MI0010781 | None | gb|NNSW01000027.1| | 2971584 | 2971685 | + | Medium |
| sme-mir-36b | MI0010782 | None | gb|NNSW01001095.1| | 59490 | 59590 | + | High |
| sme-mir-1992 | MI0010783 | None | gb|NNSW01000030.1| | 1784489 | 1784580 | + | Medium |
| sme-mir-2154-1 | MI0010784 | None | gb|NNSW01000269.1| | 298183 | 298289 | - | Medium |
| sme-mir-216 | MI0010785 | None | gb|NNSW01000085.1| | 414232 | 414334 | + | High |
| sme-mir-2156a | MI0010786 | None | gb|NNSW01000056.1| | 2151288 | 2151385 | + | High |
| sme-mir-9b | MI0010787 | None | gb|NNSW01000025.1| | 1299407 | 1299502 | + | High |
| sme-mir-9a | MI0010788 | None | gb|NNSW01000020.1| | 3968639 | 3968743 | - | High |
| sme-mir-1175 | MI0010789 | None | gb|NNSW01000008.1| | 4209489 | 4209587 | + | High |
| sme-mir-2157 | MI0010790 | None | gb|NNSW01000085.1| | 414501 | 414595 | + | High |
| sme-mir-2158 | MI0010791 | None | gb|NNSW01000007.1| | 5199065 | 5199166 | + | High |
| sme-mir-2159 | MI0010792 | None | gb|NNSW01000024.1| | 706615 | 706711 | - | Medium |
| sme-mir-7d | MI0010793 | None | gb|NNSW01000075.1| | 971144 | 971268 | - | High |
| sme-mir-2160-1 | MI0010794 | None | gb|NNSW01000982.1| | 22459 | 22562 | - | - |
| sme-mir-2161 | MI0010795 | None | gb|NNSW01000069.1| | 431078 | 431183 | - | High |
| sme-mir-2162 | MI0010796 | None | gb|NNSW01000017.1| | 2221541 | 2221636 | + | High |
| sme-mir-2163 | MI0010797 | None | gb|NNSW01000652.1| | 28783 | 28888 | + | High |
| sme-mir-133a | MI0010799 | None | gb|NNSW01000875.1| | 55387 | 55494 | + | High |
| sme-mir-2164 | MI0010800 | None | gb|NNSW01001036.1| | 51679 | 51774 | + | High |
| sme-mir-2165 | MI0010801 | None | gb|NNSW01000069.1| | 1193059 | 1193170 | - | High |
| sme-mir-36c | MI0010802 | None | gb|NNSW01000706.1| | 45663 | 45764 | - | Medium |
| sme-mir-96a | MI0010803 | None | gb|NNSW01000022.1| | 4678443 | 4678550 | + | Medium |
| sme-mir-2166 | MI0010804 | None | gb|NNSW01000792.1| | 101554 | 101658 | - | High |
| sme-mir-2167 | MI0010805 | None | gb|NNSW01000025.1| | 5887488 | 5887591 | + | High |
| sme-mir-2147b | MI0010806 | None | gb|NNSW01000036.1| | 3155861 | 3155956 | + | Low |
| sme-mir-2168 | MI0010807 | None | gb|NNSW01000232.1| | 425134 | 425227 | - | Medium |
| sme-mir-2169 | MI0010808 | None | gb|NNSW01000073.1| | 1419110 | 1419203 | + | High |
| sme-mir-754d | MI0010810 | None | gb|NNSW01000298.1| | 258551 | 258644 | + | - |
| sme-mir-2170 | MI0010811 | None | gb|NNSW01000070.1| | 1655510 | 1655602 | - | - |
| sme-mir-2147c | MI0010813 | None | gb|NNSW01000013.1| | 6028525 | 6028620 | - | - |
| sme-mir-2171 | MI0010814 | None | gb|NNSW01000014.1| | 5227440 | 5227534 | + | Low |
| sme-mir-2172 | MI0010815 | None | gb|NNSW01000004.1| | 9166022 | 9166121 | + | High |
| sme-mir-96b | MI0010817 | None | gb|NNSW01001021.1| | 33163 | 33264 | - | - |
| sme-mir-2173 | MI0010818 | None | gb|NNSW01000044.1| | 4197593 | 4197696 | + | High |
| sme-mir-2174 | MI0010819 | None | gb|NNSW01000137.1| | 486510 | 486602 | + | Medium |
| sme-mir-2175 | MI0010820 | None | gb|NNSW01000200.1| | 716278 | 716390 | + | - |
| sme-mir-753c | MI0010822 | None | gb|NNSW01000196.1| | 95513 | 95602 | - | Medium |
| sme-mir-2176 | MI0010823 | None | gb|NNSW01000040.1| | 1330711 | 1330793 | - | - |
| sme-mir-2177 | MI0010825 | None | gb|NNSW01001126.1| | 81698 | 81793 | + | - |
| sme-mir-2178 | MI0010826 | None | gb|NNSW01001039.1| | 68765 | 68863 | - | - |
| sme-mir-2179 | MI0010827 | None | gb|NNSW01000239.1| | 274362 | 274460 | + | High |
| sme-mir-315 | MI0010828 | None | gb|NNSW01000017.1| | 5952869 | 5952972 | - | High |
| sme-mir-2180 | MI0010829 | None | gb|NNSW01000240.1| | 98923 | 99008 | - | - |
| sme-mir-2181 | MI0010830 | None | gb|NNSW01000269.1| | 293335 | 293438 | + | - |
| sme-mir-2155 | MI0010831 | None | gb|NNSW01000157.1| | 1344819 | 1344908 | - | - |
| sme-mir-124c-2 | MI0010936 | None | gb|NNSW01001846.1| | 55682 | 55769 | - | High |
| sme-mir-2154-2 | MI0010944 | None | gb|NNSW01000269.1| | 298189 | 298286 | - | Medium |
| sme-mir-31b-2 | MI0010945 | None | gb|NNSW01000043.1| | 2461897 | 2461960 | - | High |
| sme-mir-754c-2 | MI0010946 | None | gb|NNSW01000325.1| | 186555 | 186632 | - | Medium |
| sme-mir-754b-2 | MI0010947 | None | gb|NNSW01000051.1| | 796248 | 796333 | + | Medium |
| sme-mir-2160-2 | MI0010948 | None | gb|NNSW01000982.1| | 22465 | 22557 | - | - |
| sme-bantam-c-2 | MI0010953 | None | gb|NNSW01000102.1| | 1106008 | 1106072 | - | High |
| sme-mir-31b-3 | MI0010954 | None | gb|NNSW01000043.1| | 2461897 | 2461960 | - | High |