Stem-loop sme-mir-748

Accession

MI0005174

Description

Schmidtea mediterranea sme-mir-748 precursor miRNA

Literature search

1 open access papers mention sme-mir-748
(1 sentences)

Sequence

25973 reads, 561.0 reads per million, 28 experiments

caaucacauuauguCCUUAUUAUAUUGCUGUCAAGUaagcacuacUGGACGGAAGUGUAAUGAGGGUaaaauugugaaa
...(((((...(((((((((((((((.(((((.((((.....)))).))))).)))))))))))))))....)))))..

Structure

caa     -uua               G     A    a 
   ucaca    uguCCUUAUUAUAUU CUGUC AGUa g
   |||||    ||||||||||||||| ||||| |||| c
   agugu    aUGGGAGUAAUGUGA GGCAG Ucau a
-aa     uaaa               A     G    c 

Annotation confidence High

Genome context

gb|NNSW01000155.1|: 107003-107081 [-]

Mature sme-miR-748-5p

• Accession: MIMAT0012123
• Description: Schmidtea mediterranea sme-miR-748-5p mature miRNA
• Sequence: 15 - CCUUAUUAUAUUGCUGUCAAGU - 36
• Evidence: experimental ; Illumina [2-3]

Mature sme-miR-748-3p

• Accession: MIMAT0004015
• Description: Schmidtea mediterranea sme-miR-748-3p mature miRNA
• Sequence: 46 - UGGACGGAAGUGUAAUGAGGGU - 67
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491