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Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea |
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|---|---|
| PubMed ID | 19553344 |
| Authors | "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR" |
| Journal | "RNA |
| Volume | 15 |
| Pages | 1483-1491 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| sme-bantam-a | MI0005119 | None | Contig215 | 4136 | 4199 | - | - |
| sme-bantam-b | MI0005120 | None | Contig362 | 106656 | 106734 | - | - |
| sme-bantam-c-1 | MI0005121 | None | Contig33813 | 3009 | 3073 | - | - |
| sme-let-7a | MI0005122 | None | None | None | - | ||
| sme-let-7b | MI0005123 | None | Contig20276 | 1039 | 1119 | + | - |
| sme-let-7c | MI0005124 | None | Contig10988 | 10654 | 10748 | - | - |
| sme-lin-4 | MI0005125 | None | Contig1776 | 50558 | 50654 | - | - |
| sme-mir-1a | MI0005128 | None | Contig156 | 220435 | 220508 | + | - |
| sme-mir-1b | MI0005129 | None | Contig577 | 101727 | 101808 | + | - |
| sme-mir-1c | MI0005130 | None | Contig577 | 106527 | 106605 | + | - |
| sme-mir-2a-1 | MI0005131 | None | Contig1403 | 125998 | 126087 | + | - |
| sme-mir-2a-2 | MI0005132 | None | Contig2151 | 51170 | 51250 | + | - |
| sme-mir-2b | MI0005133 | None | Contig242 | 185781 | 185857 | - | - |
| sme-mir-2c | MI0005134 | None | Contig297 | 116024 | 116116 | - | - |
| sme-mir-2d | MI0005135 | None | Contig1374 | 32443 | 32550 | - | - |
| sme-mir-7a | MI0005136 | None | Contig4049 | 1281 | 1351 | + | - |
| sme-mir-7b | MI0005137 | None | Contig511 | 137580 | 137689 | + | - |
| sme-mir-7c | MI0005138 | None | Contig14269 | 19335 | 19426 | + | - |
| sme-mir-8a | MI0005139 | None | Contig1018 | 3846 | 3915 | + | - |
| sme-mir-10b | MI0005140 | None | Contig24755 | 3773 | 3876 | - | - |
| sme-mir-12 | MI0005141 | None | Contig14699 | 8967 | 9070 | - | - |
| sme-mir-13 | MI0005142 | None | Contig1374 | 32236 | 32295 | - | - |
| sme-mir-745 | MI0005143 | None | Contig2406 | 24935 | 25027 | + | - |
| sme-mir-746 | MI0005144 | None | Contig1695 | 140627 | 140754 | - | - |
| sme-mir-31a | MI0005145 | None | Contig18208 | 1122 | 1220 | - | - |
| sme-mir-31b-1 | MI0005146 | None | Contig5733 | 42326 | 42410 | + | - |
| sme-mir-36a | MI0005147 | None | Contig3934 | 37835 | 37920 | + | - |
| sme-mir-61a | MI0005148 | None | Contig315 | 54913 | 55016 | + | - |
| sme-mir-71a-1 | MI0005149 | None | Contig1403 | 125898 | 125981 | + | - |
| sme-mir-71a-2 | MI0005150 | None | Contig2151 | 51077 | 51154 | + | - |
| sme-mir-71b | MI0005151 | None | Contig1374 | 32561 | 32660 | - | - |
| sme-mir-71c | MI0005152 | None | Contig297 | 116135 | 116216 | - | - |
| sme-mir-79 | MI0005153 | None | Contig2219 | 55762 | 55854 | - | - |
| sme-mir-87a | MI0005154 | None | Contig961 | 4077 | 4171 | + | - |
| sme-mir-87b | MI0005155 | None | Contig17117 | 10830 | 10937 | - | - |
| sme-mir-92 | MI0005156 | None | Contig5274 | 27363 | 27446 | + | - |
| sme-mir-124a | MI0005157 | None | Contig19989 | 5815 | 5897 | - | - |
| sme-mir-124b | MI0005158 | None | Contig12040 | 20049 | 20132 | - | - |
| sme-mir-124c-1 | MI0005159 | None | Contig6861 | 19831 | 19915 | + | - |
| sme-mir-125a | MI0005160 | None | Contig13184 | 12140 | 12234 | - | - |
| sme-mir-125b | MI0005161 | None | Contig20519 | 5873 | 5963 | + | - |
| sme-mir-133b | MI0005162 | None | Contig23301 | 4584 | 4670 | + | - |
| sme-mir-184 | MI0005163 | None | Contig15109 | 7642 | 7731 | + | - |
| sme-mir-190a | MI0005164 | None | Contig9045 | 10743 | 10816 | - | - |
| sme-mir-190b | MI0005165 | None | Contig258 | 85956 | 86043 | + | - |
| sme-mir-747 | MI0005166 | None | Contig1616 | 21999 | 22090 | - | - |
| sme-mir-219 | MI0005167 | None | Contig383 | 20071 | 20168 | + | - |
| sme-mir-277a | MI0005168 | None | Contig23836 | 3905 | 3995 | - | - |
| sme-mir-277b | MI0005169 | None | Contig23836 | 4203 | 4283 | - | - |
| sme-mir-277c | MI0005170 | None | Contig520 | 104019 | 104106 | + | - |
| sme-mir-278 | MI0005171 | None | Contig1271 | 12661 | 12758 | - | - |
| sme-mir-281 | MI0005172 | None | Contig6524 | 4460 | 4555 | + | - |
| sme-mir-67 | MI0005173 | None | Contig1175 | 63427 | 63504 | - | - |
| sme-mir-748 | MI0005174 | None | Contig4720 | 35037 | 35115 | + | - |
| sme-mir-750 | MI0005176 | None | Contig1078 | 22657 | 22761 | + | - |
| sme-mir-752 | MI0005178 | None | Contig1374 | 32325 | 32438 | - | - |
| sme-mir-754a | MI0005180 | None | Contig34301 | 290 | 362 | + | - |
| sme-mir-755 | MI0005181 | None | Contig1078 | 22802 | 22873 | + | - |
| sme-mir-756 | MI0005182 | None | Contig217 | 54473 | 54567 | - | - |
| sme-mir-277d | MI0005183 | None | Contig520 | 103909 | 103989 | + | - |
| sme-mir-10a | MI0010763 | None | Contig3771 | 5918 | 6010 | - | - |
| sme-mir-2148 | MI0010764 | None | Contig12516 | 6907 | 7002 | - | - |
| sme-mir-753b | MI0010766 | None | Contig7065 | 2454 | 2544 | + | - |
| sme-mir-61b | MI0010767 | None | Contig3451 | 4512 | 4607 | + | - |
| sme-mir-87c | MI0010768 | None | Contig2469 | 10412 | 10510 | + | - |
| sme-mir-2149 | MI0010769 | None | Contig997 | 5623 | 5724 | + | - |
| sme-mir-2151 | MI0010772 | None | Contig2742 | 61491 | 61580 | + | - |
| sme-mir-87d | MI0010775 | None | Contig19991 | 5071 | 5175 | + | - |
| sme-mir-754b-1 | MI0010776 | None | Contig23853 | 3941 | 4034 | + | - |
| sme-mir-754c-1 | MI0010777 | None | Contig329 | 118321 | 118413 | - | - |
| sme-mir-124d | MI0010778 | None | Contig791 | 74189 | 74282 | - | - |
| sme-mir-124e | MI0010779 | None | Contig2459 | 516 | 608 | - | - |
| sme-mir-8b | MI0010780 | None | Contig2498 | 379 | 476 | + | - |
| sme-mir-1993 | MI0010781 | None | Contig1563 | 42889 | 42990 | - | - |
| sme-mir-36b | MI0010782 | None | Contig20276 | 572 | 672 | + | - |
| sme-mir-1992 | MI0010783 | None | Contig11270 | 11882 | 11973 | - | - |
| sme-mir-2154-1 | MI0010784 | None | Contig21503 | 11131 | 11237 | + | - |
| sme-mir-216 | MI0010785 | None | Contig23847 | 7596 | 7698 | - | - |
| sme-mir-2156a | MI0010786 | None | Contig1400 | 30023 | 30120 | - | - |
| sme-mir-9b | MI0010787 | None | Contig1910 | 62759 | 62854 | + | - |
| sme-mir-9a | MI0010788 | None | Contig2917 | 42330 | 42434 | + | - |
| sme-mir-1175 | MI0010789 | None | Contig3917 | 32832 | 32930 | + | - |
| sme-mir-2157 | MI0010790 | None | Contig23847 | 7335 | 7429 | - | - |
| sme-mir-2158 | MI0010791 | None | Contig1616 | 21867 | 21968 | - | - |
| sme-mir-2159 | MI0010792 | None | Contig9447 | 14574 | 14670 | + | - |
| sme-mir-7d | MI0010793 | None | Contig17271 | 6045 | 6169 | + | - |
| sme-mir-2160-1 | MI0010794 | None | Contig12997 | 19613 | 19716 | + | - |
| sme-mir-2161 | MI0010795 | None | Contig33 | 107534 | 107639 | + | - |
| sme-mir-2162 | MI0010796 | None | Contig946 | 66414 | 66509 | - | - |
| sme-mir-2163 | MI0010797 | None | Contig21390 | 5654 | 5759 | + | - |
| sme-mir-133a | MI0010799 | None | Contig7719 | 22250 | 22357 | + | - |
| sme-mir-2164 | MI0010800 | None | Contig13809 | 14673 | 14768 | + | - |
| sme-mir-2165 | MI0010801 | None | Contig15254 | 539 | 650 | + | - |
| sme-mir-36c | MI0010802 | None | Contig3934 | 37302 | 37403 | + | - |
| sme-mir-96a | MI0010803 | None | Contig10175 | 11049 | 11156 | - | - |
| sme-mir-2168 | MI0010807 | None | Contig508 | 30923 | 31016 | + | - |
| sme-mir-2169 | MI0010808 | None | Contig573 | 149096 | 149189 | + | - |
| sme-mir-2171 | MI0010814 | None | Contig1252 | 68837 | 68931 | - | - |
| sme-mir-2172 | MI0010815 | None | Contig2233 | 53297 | 53396 | + | - |
| sme-mir-96b | MI0010817 | None | Contig4508 | 34953 | 35054 | - | - |
| sme-mir-2173 | MI0010818 | None | Contig11322 | 1540 | 1643 | - | - |
| sme-mir-2177 | MI0010825 | None | Contig12516 | 6806 | 6901 | - | - |
| sme-mir-2179 | MI0010827 | None | Contig16538 | 4036 | 4134 | - | - |
| sme-mir-315 | MI0010828 | None | Contig20390 | 2450 | 2553 | + | - |
| sme-mir-2156b | MI0010933 | None | Contig877 | 48519 | 48600 | + | - |
| sme-mir-753e | MI0010934 | None | Contig7504 | 7763 | 7819 | + | - |
| sme-mir-76 | MI0010935 | None | Contig18565 | 5370 | 5455 | + | - |
| sme-mir-124c-2 | MI0010936 | None | Contig8879 | 8243 | 8330 | + | - |
| sme-mir-2204 | MI0010937 | None | Contig5212 | 12347 | 12426 | - | - |
| sme-mir-2e | MI0010938 | None | Contig272 | 56381 | 56476 | - | - |
| sme-mir-2206 | MI0010939 | None | Contig9421 | 12895 | 12978 | - | - |
| sme-mir-753d | MI0010940 | None | Contig12996 | 14529 | 14586 | - | - |
| sme-mir-2147d | MI0010941 | None | Contig3339 | 35249 | 35345 | + | - |
| sme-mir-2205 | MI0010942 | None | Contig5365 | 28923 | 29006 | - | - |
| sme-mir-2f | MI0010943 | None | Contig272 | 56513 | 56575 | - | - |
| sme-mir-2154-2 | MI0010944 | None | Contig21857 | 11143 | 11240 | + | - |
| sme-mir-31b-2 | MI0010945 | None | Contig27737 | 4917 | 4980 | + | - |
| sme-mir-754c-2 | MI0010946 | None | Contig5823 | 26722 | 26799 | + | - |
| sme-mir-754b-2 | MI0010947 | None | Contig29676 | 7130 | 7215 | - | - |
| sme-mir-2160-2 | MI0010948 | None | Contig31371 | 1017 | 1109 | + | - |
| sme-mir-2202 | MI0010949 | None | Contig28205 | 2579 | 2667 | - | - |
| sme-mir-2203 | MI0010950 | None | Contig43306 | 3412 | 3483 | + | - |
| sme-mir-2200 | MI0010951 | None | Contig1580 | 76060 | 76143 | + | - |
| sme-mir-2201 | MI0010952 | None | Contig3745 | 19380 | 19466 | - | - |
| sme-bantam-c-2 | MI0010953 | None | Contig483 | 150256 | 150320 | + | - |
| sme-mir-31b-3 | MI0010954 | None | Contig27737 | 5595 | 5658 | + | - |