Stem-loop sme-mir-36b

Accession

MI0010782

Description

Schmidtea mediterranea sme-mir-36b precursor miRNA

Literature search

2 open access papers mention sme-mir-36b
(4 sentences)

Sequence

3012571 reads, 59022.0 reads per million, 28 experiments

uuuuuuaacagucuaacucugGAUUGAUGUUAUUCGGUAUGAUcuagaauaaaaauuaUCACCGGGUAGACAUUAAUCAUgcaguuagagucuguaguccu
.......((((((((((((..((((((((((((((((((((((...........))))).))))))).))))))))))..).)))))))..))))......

Structure

uuuuuua    --       - ug          -       -     cuag 
       acag  ucuaacu c  GAUUGAUGUU AUUCGGU AUGAU    a
       ||||  ||||||| |  |||||||||| ||||||| |||||    a
       uguc  agauuga g  CUAAUUACAG UGGGCCA Uauua    u
-uccuga    ug       c UA          A       C     aaaa 

Annotation confidence High

Genome context

gb|NNSW01001095.1|: 59490-59590 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-36b

Mature sme-miR-36b-5p

• Accession: MIMAT0012141
• Description: Schmidtea mediterranea sme-miR-36b-5p mature miRNA
• Sequence: 22 - GAUUGAUGUUAUUCGGUAUGAU - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-36b-3p

• Accession: MIMAT0011242
• Description: Schmidtea mediterranea sme-miR-36b-3p mature miRNA
• Sequence: 59 - UCACCGGGUAGACAUUAAUCAU - 80
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491