Stem-loop sme-mir-9a

Accession

MI0010788

Description

Schmidtea mediterranea sme-mir-9a precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

uuguuuaauugacuauauggUCUUUGGUUUUCUAGCUGUAUGAUuguaaaauuuguugaaauCACACACUAGAUUACCAAUUUCauauauuauaugugaucaucu
.............(((((((...(((((..(((((.(((.(((((.(((......))).))))).))))))))..)))))..)))))))................

Structure

---uuguuuaauugac       UCU     UU     C   A     g   aa 
                uauaugg   UUGGU  UCUAG UGU UGAUu uaa  u
                |||||||   |||||  ||||| ||| ||||| |||   
                auauaCU   AACCA  AGAUC ACA ACuaa guu  u
ucuacuaguguauauu       -UU     UU     -   C     a   gu 

Annotation confidence Not enough data

Genome context

Contig2917: 42330-42434 [+]

Mature sme-miR-9a-5p

• Accession: MIMAT0011248
• Description: Schmidtea mediterranea sme-miR-9a-5p mature miRNA
• Sequence: 21 - UCUUUGGUUUUCUAGCUGUAUGAU - 44
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-9a-3p

• Accession: MIMAT0012146
• Description: Schmidtea mediterranea sme-miR-9a-3p mature miRNA
• Sequence: 63 - CACACACUAGAUUACCAAUUUC - 84
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491