Stem-loop sme-mir-9a

Accession

MI0010788

Description

Schmidtea mediterranea sme-mir-9a precursor miRNA

Sequence

54945 reads, 1024.0 reads per million, 28 experiments

uuguuuaauugacuauauggUCUUUGGUUUUCUAGCUGUAUGAUuguaaaauuuguugaaaucACACACUAGAUUACCAAUUUCauauauuauaugugaucaucu
.............(((((((...(((((..(((((.(((.(((((.(((......))).))))).))))))))..)))))..)))))))................

Structure

---uuguuuaauugac       UCU     UU     C   A     g   aa 
                uauaugg   UUGGU  UCUAG UGU UGAUu uaa  u
                |||||||   |||||  ||||| ||| ||||| |||   
                auauaCU   AACCA  AGAUC ACA Acuaa guu  u
ucuacuaguguauauu       -UU     UU     -   C     a   gu 

Annotation confidence High

Genome context

gb|NNSW01000020.1|: 3968639-3968743 [-]

Mature sme-miR-9a-5p

• Accession: MIMAT0011248
• Description: Schmidtea mediterranea sme-miR-9a-5p mature miRNA
• Sequence: 21 - UCUUUGGUUUUCUAGCUGUAUGAU - 44
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-9a-3p

• Accession: MIMAT0012146
• Description: Schmidtea mediterranea sme-miR-9a-3p mature miRNA
• Sequence: 64 - ACACACUAGAUUACCAAUUUC - 84
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491