Stem-loop sme-mir-2200

Accession

MI0010951

Description

Schmidtea mediterranea sme-mir-2200 precursor miRNA

Sequence

aauuuugauacaguuUGAAGACGAUUAUUAUUGAUUAUUauuguugagaugauuAAAAAAUCCGAAUUCAGCUGUauaaaaaau
..((((.((((((((.(((..(((((....(((((((((........)))))))))..))).))..))))))))))).))))..

Structure

aa    g        U   GA  -   AUUA         auu 
  uuuu auacaguu GAA  CG AUU    UUGAUUAUU   g
  |||| |||||||| |||  || |||    |||||||||    
  aaaa uaUGUCGA CUU  GC UAA    AAuuaguag   u
ua    a        -   AA  C   --AA         agu 

Annotation confidence Not enough data

Genome context

Contig1580: 76060-76143 [+]

Mature sme-miR-2200-5p

• Accession: MIMAT0011421
• Description: Schmidtea mediterranea sme-miR-2200-5p mature miRNA
• Sequence: 16 - UGAAGACGAUUAUUAUUGAUUAUU - 39
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2200-3p

• Accession: MIMAT0011422
• Description: Schmidtea mediterranea sme-miR-2200-3p mature miRNA
• Sequence: 55 - AAAAAAUCCGAAUUCAGCUGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491