Stem-loop sme-mir-2200

Accession

MI0010951

Description

Schmidtea mediterranea sme-mir-2200 precursor miRNA

Sequence

450 reads, 9.0 reads per million, 28 experiments

aauuuugauacaguUUGAAGACGAUUAUUAUUGAUUauuauuguugagaugauuaaaaaaUCCGAAUUCAGCUGUAUAAAAAAU
..((((.((((((((.(((..(((((....(((((((((........)))))))))..))).))..))))))))))).))))..

Structure

aa    g        U   GA  -   AUUA         auu 
  uuuu auacaguU GAA  CG AUU    UUGAUUauu   g
  |||| |||||||| |||  || |||    |||||||||    
  AAAA UAUGUCGA CUU  GC Uaa    aauuaguag   u
UA    A        -   AA  C   --aa         agu 

Annotation confidence Low

Genome context

gb|NNSW01000024.1|: 89250-89333 [-]

Mature sme-miR-2200-5p

• Accession: MIMAT0011421
• Description: Schmidtea mediterranea sme-miR-2200-5p mature miRNA
• Sequence: 15 - UUGAAGACGAUUAUUAUUGAUU - 36
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2200-3p

• Accession: MIMAT0011422
• Description: Schmidtea mediterranea sme-miR-2200-3p mature miRNA
• Sequence: 61 - UCCGAAUUCAGCUGUAUAAAAAAU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491