Stem-loop sme-mir-2179

Accession

MI0010827

Description

Schmidtea mediterranea sme-mir-2179 precursor miRNA

Sequence

207888 reads, 3602.0 reads per million, 28 experiments

cauacuaagucuauuuguauUGCAAAAAUAUUUAUAUUUAACUCauuucucuaaaugAGACUAUAGAGAUUUUUGCUAUgcauuaggcuggagccguca
.......((((((..(((((.((((((((.((((((.....(((((((....)))))))..)))))).)))))))).))))).))))))..........

Structure

---cauacua      uu     U        A      UUUAA       c 
          agucua  uguau GCAAAAAU UUUAUA     CUCauuu u
          ||||||  ||||| |||||||| ||||||     |||||||  
          ucggau  acgUA CGUUUUUA AGAUAU     GAguaaa c
acugccgagg      -u     U        G      ---CA       u 

Annotation confidence High

Genome context

gb|NNSW01000239.1|: 274362-274460 [+]

Mature sme-miR-2179-5p

• Accession: MIMAT0012166
• Description: Schmidtea mediterranea sme-miR-2179-5p mature miRNA
• Sequence: 21 - UGCAAAAAUAUUUAUAUUUAACUC - 44
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2179-3p

• Accession: MIMAT0011281
• Description: Schmidtea mediterranea sme-miR-2179-3p mature miRNA
• Sequence: 58 - AGACUAUAGAGAUUUUUGCUAU - 79
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491