Stem-loop sme-mir-753d

Accession

MI0010940

Description

Schmidtea mediterranea sme-mir-753d precursor miRNA

Sequence

26220 reads, 500.0 reads per million, 28 experiments

ucAGGGCUUGGAUUGUGAUCUCguauauuuaUGAGAUCAUUAUUCAAGCUCUcuaaau
..(((((((((((.(((((((((((....))))))))))).)))))))))))......

Structure

----uc           U           u 
      AGGGCUUGGAU GUGAUCUCgua a
      ||||||||||| |||||||||||  
      UCUCGAACUUA UACUAGAGUau u
uaaauc           U           u 

Annotation confidence Medium

Comments

This sequence was named mir-753b-2 in [1]. The mature sequence differs from mir-753b, so the entry is renamed here.

Genome context

gb|NNSW01001241.1|: 53697-53751 [+]

Mature sme-miR-753d-5p

• Accession: MIMAT0011404
• Description: Schmidtea mediterranea sme-miR-753d-5p mature miRNA
• Sequence: 3 - AGGGCUUGGAUUGUGAUCUC - 22
• Evidence: experimental ; Illumina [1]

Mature sme-miR-753d-3p

• Accession: MIMAT0011405
• Description: Schmidtea mediterranea sme-miR-753d-3p mature miRNA
• Sequence: 32 - UGAGAUCAUUAUUCAAGCUCU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491