Stem-loop sme-mir-9b

Accession

MI0010787

Description

Schmidtea mediterranea sme-mir-9b precursor miRNA

Sequence

19455 reads, 359.0 reads per million, 28 experiments

acaaaugucaaaucaagauuUCUUUGGUUGUUUAGCUAUAUGAaugucuaggucAUAUACUGCAUAAUCAAAGUUGUcugauuugaguaagcuucc
.......((((((((.(((..((((((((((.(((.(((((((.........)))))))))).))))))))))..)))))))))))..........

Structure

---acaaaug        a   uU          U   C       aug 
          ucaaauca gau  CUUUGGUUGU UAG UAUAUGA   u
          |||||||| |||  |||||||||| ||| |||||||   c
          aguuuagu cUG  GAAACUAAUA GUC AUAUAcu   u
ccuucgaaug        -   UU          C   -       gga 

Annotation confidence High

Genome context

gb|NNSW01000025.1|: 1299407-1299502 [+]

Mature sme-miR-9b-5p

• Accession: MIMAT0011247
• Description: Schmidtea mediterranea sme-miR-9b-5p mature miRNA
• Sequence: 21 - UCUUUGGUUGUUUAGCUAUAUGA - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-9b-3p

• Accession: MIMAT0012145
• Description: Schmidtea mediterranea sme-miR-9b-3p mature miRNA
• Sequence: 55 - AUAUACUGCAUAAUCAAAGUUGU - 77
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491