Stem-loop sme-mir-746

Accession

MI0005144

Description

Schmidtea mediterranea sme-mir-746 precursor miRNA

Sequence

88408 reads, 1739.0 reads per million, 28 experiments

ugauaauucgcauaacaucuagCCGGAUAAAUCCUGUGUGCAUUGauagaaagugaaaugauuuuauucauaagaucuaccauaucUAGCACCAGGGUAUAUCGGGAUUGaaacgaacaugaucauca
((((..((((.......((...((.((((.((((((.((((.....((((..(((....(((((((....)))))))...))).)))))))))))))).)))).))...))..))))....))))...

Structure

---    --aa    cauaaca  uag  G    A      U    AUUGa    aa   aaau       u 
   ugau    uucg       uc   CC GAUA AUCCUG GUGC     uaga  gug    gauuuua u
   ||||    ||||       ||   || |||| |||||| ||||     ||||  |||    |||||||  
   acua    aagc       aG   GG CUAU UGGGAC CACG     AUcu  uac    cuagaau c
acu    guac    -----aa  UUA  G    A      -    -----    -a   -cau       a 

Annotation confidence High

Genome context

gb|NNSW01000203.1|: 962292-962419 [+]

Mature sme-miR-746-5p

• Accession: MIMAT0012103
• Description: Schmidtea mediterranea sme-miR-746-5p mature miRNA
• Sequence: 23 - CCGGAUAAAUCCUGUGUGCAUUG - 45
• Evidence: experimental ; 454 [2], Illumina [2-3]

Mature sme-miR-746-3p

• Accession: MIMAT0003978
• Description: Schmidtea mediterranea sme-miR-746-3p mature miRNA
• Sequence: 87 - UAGCACCAGGGUAUAUCGGGAUUG - 110
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491