Stem-loop sme-mir-281

Accession

MI0005172

Description

Schmidtea mediterranea sme-mir-281 precursor miRNA

Literature search

2 open access papers mention sme-mir-281
(2 sentences)

Sequence

218598 reads, 4075.0 reads per million, 28 experiments

uuacagcuuacaaUGAAGAGCUAUUCAUGAGGUGcaguauaaugacaauuucaucuguuccccaUGUCAUGGAUAUGCUCUUCAUaaaagcuauaa
....(((((...((((((((((((((((((.(((..(.(((((((.....)))).))).)..))).))))))))).)))))))))..)))))....

Structure

uuac     aca         -         G   ca u   -    c 
    agcuu   aUGAAGAGC UAUUCAUGA GUG  g aua auga a
    |||||   ||||||||| ||||||||| |||  | ||| |||| a
    ucgaa   UACUUCUCG AUAGGUACU Uac  c ugu uacu u
aaua     -aa         U         G   cc u   c    u 

Annotation confidence High

Genome context

gb|NNSW01001460.1|: 7289-7384 [+]

Mature sme-miR-281-5p

• Accession: MIMAT0004012
• Description: Schmidtea mediterranea sme-miR-281-5p mature miRNA
• Sequence: 14 - UGAAGAGCUAUUCAUGAGGUG - 34
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-281-3p

• Accession: MIMAT0004013
• Description: Schmidtea mediterranea sme-miR-281-3p mature miRNA
• Sequence: 65 - UGUCAUGGAUAUGCUCUUCAU - 85
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491