Stem-loop sme-mir-2172

Accession

MI0010815

Description

Schmidtea mediterranea sme-mir-2172 precursor miRNA

Sequence

1882 reads, 22.0 reads per million, 28 experiments

aauaauuuuccauugauuugGAAAUAAUGACUAUGCAUGGGACauuaguagagcuugUACAUGUAUAGUAUUAUUUGCCUGucauuggauuuaucagcga
........((((.((((..((((((((((.(((((((((..(((..(((...)))))).))))))))))))))))).)).)))).))))...........

Structure

---aauaauuu    u    uu  -        A         GG   uu   a 
           ucca ugau  gG AAAUAAUG CUAUGCAUG  ACa  agu  
           |||| ||||  || |||||||| |||||||||  |||  ||| g
           aggu acuG  CC UUUAUUAU GAUAUGUAC  Ugu  ucg  
agcgacuauuu    u    -U  G        -         -A   --   a 

Annotation confidence High

Genome context

gb|NNSW01000004.1|: 9166022-9166121 [+]

Mature sme-miR-2172-5p

• Accession: MIMAT0012162
• Description: Schmidtea mediterranea sme-miR-2172-5p mature miRNA
• Sequence: 21 - GAAAUAAUGACUAUGCAUGGGAC - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-2172-3p

• Accession: MIMAT0011272
• Description: Schmidtea mediterranea sme-miR-2172-3p mature miRNA
• Sequence: 58 - UACAUGUAUAGUAUUAUUUGCCUG - 81
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491